Skip to flight searchSkip to main content
Airline banner image
San Juan Airlines Logo

Search & book flights with San Juan Airlines

Buy San Juan Airlines flights with Alternative Airlines

San Juan Airlines is a commuter airline that operates scheduled flights within the U.S. state of Washington. The carrier operates out of its hub at Bellingham Airport (BLI), near the San Juan Islands. San Juan Airlines was founded in 1947 and bought out Pearson Aircraft in 1981. It later disappeared for over a decade after competitive pressures forced the airline to terminate in 1989. However, the airline returned to operations in February 2002.

In 2014, Northwest Sky Ferry merged with San Juan Air (as it's often referred to). In May 2019, the airline became the third airline to start weekly passenger operations at the Paine Field airport in Snohomish County within the state of Washington D.C. Overall, the airline has a fleet of 5 turboprop aircraft ranging from Cessnas that can in total carry 21 passengers at one time.

San Juan Airlines currently operates 24 regularly scheduled flights within Washington D.C. and Oregon (U.S.), as well as to British Columbia, in Canada. The airline also flies to the San Juan Islands with the only scheduled flight from Anacortes Airport (ANC) and Bellingham Airport (BLI) to the islands.

Looking for flights to the San Juan Islands? San Juan Airlines operates private charter and scheduled passenger flights to the San Juan islands, which are just off the coast of Washington.

Baggage Policy

San Juan Airlines has a different baggage policy for carry-on and checked baggage policy.

Carry-on Baggage

The airline's baggage allowance includes all bags, carry-ons, laptop bags, purses and other items. All baggage must be weighed.

Checked Baggage

San Juan Airlines passengers are permitted to take 18kg of baggage per person and not exceed 127 linear centimetres (length + width + height). Any additional baggage will be charged at the current excess baggage rate. The airline isn't permitted to take hazardous materials such as flammables, compressed gases, batteries and toxic substances. If you are not certain if the goods you will be taking may be denied loading.

Cabin Classes

The airline mostly operates small flights and there is only one cabin class that is provided on the aircraft and that is the standard Economy class. The airline gives you amenities such as the one free checked piece of baggage, snacks, drinks and the option of choosing your seat.


Seats are positioned in a 1 x 2 formation depending on the aircraft, ensuring that each passenger will sit by either a window, aisle or both.


San Juan Airlines passengers must check in at the airport since the airline doesn't offer online check in.

Online Check-in

Online check-in before your flight isn't required when travelling with the airline

Airport Check-in

When passengers arrive at the terminal of the airport, they will hand in their boarding pass and the airline will take care of their luggage. It would take a few minutes for you to get checked in. The airline emphasis that passengers are advised to arrive 2 hours before their scheduled departure time. The airline crew from their will be ready to help in the check-in and boarding process.

Frequent Flyer Program

The airline does not currently offer a frequent flyer program.

Airline Alliance

The airline is not currently part of an airline alliance program.

Country flags

Destinations that San Juan Airlines flies to

As of September 2020, the airline has scheduled flights to 24 destinations within the US. Popular San Juan flights include Anacortes, Bellingham, Friday Harbour, Portland, Vancouver and Victoria, among others. The airline operates regular flights to and within the San Juan islands, which are off the coast of the U.S. state of Washington.

If you're looking to fly within the US, our guide to domestic flights within USA offers lots of helpful information, including an airline guide and FAQs.

Alternatives to San Juan Airlines

San Juan Airlines is one of the airlines that fly to San Juan, however, if you can't find any flights with San Juan Airlines to your destination, please click on the logos below to find out more about airlines that fly similar routes:

Trusted globally

Rated Excellent on Trustpilot

We’re super proud of our Trustpilot rating, but don’t just take it from us. See why millions of others love booking their flights through Alternative Airlines

Buy now, pay later

Buy your flights now and pay later

No way, really?! Yes! We’ve partnered with some amazing BNPL payment providers to allow you to pay for your flights over time, with ease.

Hub Airport

Bellingham Airport (BLI)

Bellingham Airport (BLI) is a public airport in Bellingham, within the county of Whatcom, United States. The airport serves over 700,000 passengers a year. The airport is located in the 5km northwest of Bellingham, It's the third-largest commercial airport in Washington.

The 3 airlines that fly to and from Bellingham Airport (BLI) including Alaska AirlinesAllegiant Airlines and San Juan Airlines.


As of September 2020, the airline operates a fleet of 5 aircraft:

  • 2 x Cessna Skyhawk C172 (3 passengers per aircraft)
  • 2 x Cessna Skywagon C207 (5 passengers per aircraft)
  • 1 x Cessna Stationair C206 (5 passengers per aircraft)

Frequently asked questions

Can I book San Juan flights online?

Yes, Alternative Airlines is an online flight search and booking site that makes it easy to find the flights you’re after. The beautiful islands of San Juan are just off the coast from the U.S. state of Washington. To begin, use the search bar at the top of the page, by entering Jan Juan as your arrival airport, and the U.S. airport you’ll be departing from.

Where does San Juan Airlines fly to?

San Juan Airlines primarily operates flights within the U.S. state of Washington and offers scheduled passenger services to several destinations in the Pacific Northwest region. Their flight network includes locations in Washington, Oregon, and British Columbia, Canada.

Can I cancel my flights to San Juan Islands?

Whether your flight tickets are refundable will depend on the airline's ticket rules, and will be detailed during the booking process. But did you know that, when you book through Alternative Airlines, you can add flight insurance to your booking? This entitles you to a refund if you need to cancel your flight for a number of reasons outside your control.

What airlines fly to San Juan, Puerto Rico?

Many airlines operate flights to San Juan, Puerto Rico, including American Airlines, Delta Air Lines, Southwest Airlines and JetBlue. However although it has the same name as the city in Puerto Rico, San Juan Airlines does not operate flights to San Juan in Puerto - only to San Juan Island in Washington, USA.